Detailed information of SNP:
|
SNP ID:
sf1208267943(Gbrowse)
Chromosome: chr12 Position: 8267943 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.40% | 37.60% |
| All Indica | 788 | 68.02% | 31.98% |
| All Japonica | 497 | 52.92% | 47.08% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 367 | 66.21% | 33.79% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 36.72% | 63.28% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208267943 | T->A | INTERGENIC | None |