Detailed information of SNP:
SNP ID:
sf1208271639(Gbrowse)
Chromosome: chr12 Position: 8271639 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 95.98% | 4.02% |
All Indica | 799 | 94.99% | 5.01% |
All Japonica | 497 | 98.19% | 1.81% |
Aus | 67 | 94.03% | 5.97% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 213 | 90.14% | 9.86% |
Indica Intermediate | 211 | 95.73% | 4.27% |
Temperate Japonica | 335 | 98.81% | 1.19% |
Tropical Japonica | 94 | 96.81% | 3.19% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1208271639 | T->C | INTERGENIC | None |