Detailed information of SNP:
|
SNP ID:
sf1208273282(Gbrowse)
Chromosome: chr12 Position: 8273282 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 68.05% | 31.95% |
| All Indica | 787 | 91.87% | 8.13% |
| All Japonica | 490 | 30.20% | 69.80% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 330 | 17.58% | 82.42% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208273282 | A->G | INTERGENIC | None |