Detailed information of SNP:
|
SNP ID:
sf1208273604(Gbrowse)
Chromosome: chr12 Position: 8273604 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 65.74% | 34.26% |
| All Indica | 793 | 90.54% | 9.46% |
| All Japonica | 488 | 26.02% | 73.98% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 331 | 16.62% | 83.38% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 65 | 30.77% | 69.23% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208273604 | C->T | INTERGENIC | None |