Detailed information of SNP:
|
SNP ID:
sf1208275298(Gbrowse)
Chromosome: chr12 Position: 8275298 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 83.51% | 16.49% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 496 | 61.29% | 38.71% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208275298 | T->C | INTERGENIC | None |