Detailed information of SNP:
|
SNP ID:
sf1208275880(Gbrowse)
Chromosome: chr12 Position: 8275880 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 60.32% | 39.68% |
| All Indica | 779 | 65.47% | 34.53% |
| All Japonica | 495 | 52.53% | 47.47% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 368 | 64.95% | 35.05% |
| Indica II | 208 | 61.06% | 38.94% |
| Indica Intermediate | 203 | 70.94% | 29.06% |
| Temperate Japonica | 333 | 36.04% | 63.96% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208275880 | T->G | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |