Detailed information of SNP:
|
SNP ID:
sf1208277795(Gbrowse)
Chromosome: chr12 Position: 8277795 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 68.07% | 31.93% |
| All Indica | 781 | 80.92% | 19.08% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 370 | 72.16% | 27.84% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 203 | 89.66% | 10.34% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208277795 | G->A | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |