Detailed information of SNP:
|
SNP ID:
sf1208277848(Gbrowse)
Chromosome: chr12 Position: 8277848 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 88.01% | 11.99% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208277848 | C->T | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |