Detailed information of SNP:
|
SNP ID:
sf1208277857(Gbrowse)
Chromosome: chr12 Position: 8277857 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 68.99% | 31.01% |
| All Indica | 788 | 81.98% | 18.02% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 369 | 73.44% | 26.56% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208277857 | C->T | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |