Detailed information of SNP:
|
SNP ID:
sf1208277894(Gbrowse)
Chromosome: chr12 Position: 8277894 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 83.72% | 16.28% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 60.53% | 39.47% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 73.57% | 26.43% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208277894 | A->T | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |