Detailed information of SNP:
|
SNP ID:
sf1208278681(Gbrowse)
Chromosome: chr12 Position: 8278681 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 54.00% | 46.00% |
| All Indica | 784 | 51.28% | 48.72% |
| All Japonica | 472 | 56.78% | 43.22% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 370 | 61.62% | 38.38% |
| Indica II | 207 | 46.86% | 53.14% |
| Indica Intermediate | 207 | 37.20% | 62.80% |
| Temperate Japonica | 319 | 73.98% | 26.02% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 61 | 32.79% | 67.21% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208278681 | G->A | LOC_Os12g14500(LOC_Os12g14500.1) | SNPs that introduce stop codons |