Detailed information of SNP:
|
SNP ID:
sf1208279298(Gbrowse)
Chromosome: chr12 Position: 8279298 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.65% | 30.35% |
| All Indica | 793 | 52.59% | 47.41% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 63.00% | 37.00% |
| Indica II | 211 | 48.34% | 51.66% |
| Indica Intermediate | 209 | 38.28% | 61.72% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208279298 | C->A | LOC_Os12g14500(LOC_Os12g14500.1) | INTRON |