Detailed information of SNP:
|
SNP ID:
sf1208283788(Gbrowse)
Chromosome: chr12 Position: 8283788 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 80.41% | 19.59% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 496 | 54.44% | 45.56% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 38.02% | 61.98% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208283788 | A->G | INTERGENIC | None |