Detailed information of SNP:
|
SNP ID:
sf1208284293(Gbrowse)
Chromosome: chr12 Position: 8284293 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 80.34% | 19.66% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 496 | 54.64% | 45.36% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 38.02% | 61.98% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208284293 | A->T | INTERGENIC | None |