Detailed information of SNP:
|
SNP ID:
sf1208298411(Gbrowse)
Chromosome: chr12 Position: 8298411 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 62.08% | 37.92% |
| All Indica | 744 | 67.74% | 32.26% |
| All Japonica | 493 | 51.52% | 48.48% |
| Aus | 54 | 81.48% | 18.52% |
| Indica I | 349 | 57.31% | 42.69% |
| Indica II | 195 | 74.87% | 25.13% |
| Indica Intermediate | 200 | 79.00% | 21.00% |
| Temperate Japonica | 332 | 34.64% | 65.36% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208298411 | A->C | INTERGENIC | None |