Detailed information of SNP:
|
SNP ID:
sf1208300856(Gbrowse)
Chromosome: chr12 Position: 8300856 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.53% | 31.47% |
| All Indica | 798 | 82.21% | 17.79% |
| All Japonica | 497 | 48.09% | 51.91% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208300856 | C->G | INTERGENIC | None |