Detailed information of SNP:
|
SNP ID:
sf1208303785(Gbrowse)
Chromosome: chr12 Position: 8303785 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 67.21% | 32.79% |
| All Indica | 783 | 43.30% | 56.70% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 53.12% | 46.88% |
| Indica II | 209 | 40.67% | 59.33% |
| Indica Intermediate | 205 | 28.29% | 71.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208303785 | C->T | INTERGENIC | None |