Detailed information of SNP:
|
SNP ID:
sf1208306041(Gbrowse)
Chromosome: chr12 Position: 8306041 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 75.87% | 24.13% |
| All Indica | 793 | 92.81% | 7.19% |
| All Japonica | 497 | 51.11% | 48.89% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208306041 | G->A | INTERGENIC | None |