Detailed information of SNP:
SNP ID:
sf1208317914(Gbrowse)
Chromosome: chr12 Position: 8317914 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1410 | 76.74% | 23.26% |
All Indica | 792 | 89.27% | 10.73% |
All Japonica | 497 | 53.32% | 46.68% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 371 | 88.68% | 11.32% |
Indica II | 211 | 89.57% | 10.43% |
Indica Intermediate | 210 | 90.00% | 10.00% |
Temperate Japonica | 335 | 36.72% | 63.28% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 80.88% | 19.12% |
Group VI/Aromatic | 12 | 83.33% | 16.67% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1208317914 | A->G | INTERGENIC | None |