Detailed information of SNP:
|
SNP ID:
sf1208317914(Gbrowse)
Chromosome: chr12 Position: 8317914 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 76.74% | 23.26% |
| All Indica | 792 | 89.27% | 10.73% |
| All Japonica | 497 | 53.32% | 46.68% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 88.68% | 11.32% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 36.72% | 63.28% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208317914 | A->G | INTERGENIC | None |