Detailed information of SNP:
|
SNP ID:
sf1208319929(Gbrowse)
Chromosome: chr12 Position: 8319929 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 70.91% | 29.09% |
| All Indica | 772 | 86.27% | 13.73% |
| All Japonica | 495 | 52.32% | 47.68% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 361 | 82.27% | 17.73% |
| Indica II | 207 | 88.41% | 11.59% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 333 | 35.74% | 64.26% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208319929 | A->T | INTERGENIC | None |