Detailed information of SNP:
|
SNP ID:
sf1208347034(Gbrowse)
Chromosome: chr12 Position: 8347034 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 96.95% | 3.05% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 91.80% | 8.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 89.94% | 10.06% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208347034 | C->T | INTERGENIC | None |