Detailed information of SNP:
|
SNP ID:
sf1208370308(Gbrowse)
Chromosome: chr12 Position: 8370308 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 91.74% | 8.26% |
| All Indica | 757 | 86.53% | 13.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 351 | 88.03% | 11.97% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 201 | 86.07% | 13.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208370308 | G->T | INTERGENIC | None |