Detailed information of SNP:
|
SNP ID:
sf1208373347(Gbrowse)
Chromosome: chr12 Position: 8373347 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.64% | 21.36% |
| All Indica | 796 | 93.22% | 6.78% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208373347 | G->A | LOC_Os12g14650(LOC_Os12g14650.1) | Synonymous |