Detailed information of SNP:
|
SNP ID:
sf1208403012(Gbrowse)
Chromosome: chr12 Position: 8403012 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 77.12% | 22.88% |
| All Indica | 770 | 93.77% | 6.23% |
| All Japonica | 496 | 52.22% | 47.78% |
| Aus | 58 | 74.14% | 25.86% |
| Indica I | 362 | 94.20% | 5.80% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 334 | 35.03% | 64.97% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208403012 | A->G | LOC_Os12g14680(LOC_Os12g14680.1) | Non-Synonymous SNP |