Detailed information of SNP:
|
SNP ID:
sf1208417997(Gbrowse)
Chromosome: chr12 Position: 8417997 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 74.96% | 25.04% |
| All Indica | 790 | 57.34% | 42.66% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 68.63% | 31.37% |
| Indica II | 209 | 54.55% | 45.45% |
| Indica Intermediate | 208 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208417997 | C->T | INTERGENIC | None |