Detailed information of SNP:
|
SNP ID:
sf1208434058(Gbrowse)
Chromosome: chr12 Position: 8434058 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 69.01% | 30.99% |
| All Indica | 791 | 49.94% | 50.06% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 373 | 59.79% | 40.21% |
| Indica II | 211 | 47.39% | 52.61% |
| Indica Intermediate | 207 | 34.78% | 65.22% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208434058 | A->C | INTERGENIC | None |