Detailed information of SNP:
SNP ID:
sf1208469429(Gbrowse)
Chromosome: chr12 Position: 8469429 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1413 | 98.37% | 1.63% |
All Indica | 793 | 97.23% | 2.77% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 99.20% | 0.80% |
Indica II | 210 | 96.67% | 3.33% |
Indica Intermediate | 209 | 94.26% | 5.74% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1208469429 | C->T | INTERGENIC | None |