Detailed information of SNP:
|
SNP ID:
sf1208469545(Gbrowse)
Chromosome: chr12 Position: 8469545 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 76.56% | 23.44% |
| All Indica | 783 | 91.44% | 8.56% |
| All Japonica | 490 | 49.80% | 50.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 365 | 91.51% | 8.49% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 330 | 33.64% | 66.36% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208469545 | T->C | INTERGENIC | None |