Detailed information of SNP:
|
SNP ID:
sf1208478024(Gbrowse)
Chromosome: chr12 Position: 8478024 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 75.23% | 24.77% |
| All Indica | 784 | 63.90% | 36.10% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 56 | 32.14% | 67.86% |
| Indica I | 369 | 63.41% | 36.59% |
| Indica II | 209 | 57.89% | 42.11% |
| Indica Intermediate | 206 | 70.87% | 29.13% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208478024 | C->G | INTERGENIC | None |