Detailed information of SNP:
|
SNP ID:
sf1208478067(Gbrowse)
Chromosome: chr12 Position: 8478067 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 74.71% | 25.29% |
| All Indica | 784 | 64.29% | 35.71% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 368 | 63.86% | 36.14% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 207 | 70.53% | 29.47% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208478067 | A->G | INTERGENIC | None |