Detailed information of SNP:
|
SNP ID:
sf1208503711(Gbrowse)
Chromosome: chr12 Position: 8503711 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1315 | 50.72% | 49.28% |
| All Indica | 726 | 60.61% | 39.39% |
| All Japonica | 485 | 35.05% | 64.95% |
| Aus | 58 | 65.52% | 34.48% |
| Indica I | 332 | 52.71% | 47.29% |
| Indica II | 198 | 65.15% | 34.85% |
| Indica Intermediate | 196 | 69.39% | 30.61% |
| Temperate Japonica | 326 | 49.08% | 50.92% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208503711 | T->C | INTERGENIC | None |