Detailed information of SNP:
|
SNP ID:
sf1208506894(Gbrowse)
Chromosome: chr12 Position: 8506894 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 72.84% | 27.16% |
| All Indica | 792 | 89.27% | 10.73% |
| All Japonica | 496 | 47.78% | 52.22% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 334 | 64.37% | 35.63% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208506894 | G->A | LOC_Os12g14860(LOC_Os12g14860.1) | Non-Synonymous SNP |