Detailed information of SNP:
|
SNP ID:
sf1208515167(Gbrowse)
Chromosome: chr12 Position: 8515167 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1199 | 61.97% | 38.03% |
| All Indica | 605 | 70.91% | 29.09% |
| All Japonica | 494 | 54.45% | 45.55% |
| Aus | 50 | 34.00% | 66.00% |
| Indica I | 289 | 78.20% | 21.80% |
| Indica II | 153 | 67.97% | 32.03% |
| Indica Intermediate | 163 | 60.74% | 39.26% |
| Temperate Japonica | 332 | 39.16% | 60.84% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208515167 | A->G | LOC_Os12g14890(LOC_Os12g14890.1) | Non-Synonymous SNP |