Detailed information of SNP:
|
SNP ID:
sf1208518522(Gbrowse)
Chromosome: chr12 Position: 8518522 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 61.00% | 39.00% |
| All Indica | 793 | 93.95% | 6.05% |
| All Japonica | 489 | 3.27% | 96.73% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 328 | 1.22% | 98.78% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208518522 | C->A | INTERGENIC | None |