Detailed information of SNP:
|
SNP ID:
sf1208519119(Gbrowse)
Chromosome: chr12 Position: 8519119 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 78.81% | 21.19% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 449 | 47.88% | 52.12% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 294 | 28.91% | 71.09% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208519119 | T->C | INTERGENIC | None |