Detailed information of SNP:
|
SNP ID:
sf1208523750(Gbrowse)
Chromosome: chr12 Position: 8523750 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1327 | 56.90% | 43.10% |
| All Indica | 721 | 57.98% | 42.02% |
| All Japonica | 493 | 54.36% | 45.64% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 348 | 63.51% | 36.49% |
| Indica II | 181 | 51.38% | 48.62% |
| Indica Intermediate | 192 | 54.17% | 45.83% |
| Temperate Japonica | 334 | 38.92% | 61.08% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208523750 | A->T | LOC_Os12g14900(LOC_Os12g14900.1) | Non-Synonymous SNP |