Detailed information of SNP:
|
SNP ID:
sf1208546897(Gbrowse)
Chromosome: chr12 Position: 8546897 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 97.19% | 2.81% |
| All Indica | 771 | 95.85% | 4.15% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 367 | 95.64% | 4.36% |
| Indica II | 198 | 97.47% | 2.53% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208546897 | C->T | INTERGENIC | None |