Detailed information of SNP:
|
SNP ID:
sf1208550899(Gbrowse)
Chromosome: chr12 Position: 8550899 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 79.45% | 20.55% |
| All Indica | 759 | 92.89% | 7.11% |
| All Japonica | 495 | 55.96% | 44.04% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 362 | 96.41% | 3.59% |
| Indica II | 198 | 87.88% | 12.12% |
| Indica Intermediate | 199 | 91.46% | 8.54% |
| Temperate Japonica | 334 | 40.42% | 59.58% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208550899 | T->C | INTERGENIC | None |