Detailed information of SNP:
|
SNP ID:
sf1208571250(Gbrowse)
Chromosome: chr12 Position: 8571250 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 93.36% | 6.64% |
| All Indica | 782 | 89.26% | 10.74% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208571250 | T->C | INTERGENIC | None |