Detailed information of SNP:
|
SNP ID:
sf1208595240(Gbrowse)
Chromosome: chr12 Position: 8595240 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 61.50% | 38.50% |
| All Indica | 731 | 41.31% | 58.69% |
| All Japonica | 481 | 96.05% | 3.95% |
| Aus | 61 | 26.23% | 73.77% |
| Indica I | 339 | 48.67% | 51.33% |
| Indica II | 197 | 40.61% | 59.39% |
| Indica Intermediate | 195 | 29.23% | 70.77% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 81 | 80.25% | 19.75% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208595240 | A->G | LOC_Os12g15060(LOC_Os12g15060.1) | INTRON |