Detailed information of SNP:
|
SNP ID:
sf1208596470(Gbrowse)
Chromosome: chr12 Position: 8596470 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 77.27% | 22.73% |
| All Indica | 682 | 65.40% | 34.60% |
| All Japonica | 491 | 97.35% | 2.65% |
| Aus | 57 | 43.86% | 56.14% |
| Indica I | 333 | 67.87% | 32.13% |
| Indica II | 176 | 69.89% | 30.11% |
| Indica Intermediate | 173 | 56.07% | 43.93% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 88.64% | 11.36% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208596470 | G->A | LOC_Os12g15060(LOC_Os12g15060.1) | Synonymous |