Detailed information of SNP:
|
SNP ID:
sf1208602218(Gbrowse)
Chromosome: chr12 Position: 8602218 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 76.73% | 23.27% |
| All Indica | 782 | 62.79% | 37.21% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 68.58% | 31.42% |
| Indica II | 209 | 56.46% | 43.54% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208602218 | T->C | LOC_Os12g15070(LOC_Os12g15070.1) | Non-Synonymous SNP |