Detailed information of SNP:
|
SNP ID:
sf1208606115(Gbrowse)
Chromosome: chr12 Position: 8606115 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 92.81% | 7.19% |
| All Indica | 772 | 87.31% | 12.69% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 92.16% | 7.84% |
| Indica II | 204 | 83.33% | 16.67% |
| Indica Intermediate | 198 | 82.32% | 17.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208606115 | C->G | INTERGENIC | None |