Detailed information of SNP:
|
SNP ID:
sf1208627827(Gbrowse)
Chromosome: chr12 Position: 8627827 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 90.04% | 9.96% |
| All Indica | 784 | 86.99% | 13.01% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 366 | 93.17% | 6.83% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 74.44% | 25.56% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208627827 | A->G | INTERGENIC | None |