Detailed information of SNP:
|
SNP ID:
sf1208628083(Gbrowse)
Chromosome: chr12 Position: 8628083 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 59.67% | 40.33% |
| All Indica | 736 | 46.33% | 53.67% |
| All Japonica | 479 | 84.76% | 15.24% |
| Aus | 61 | 29.51% | 70.49% |
| Indica I | 348 | 57.76% | 42.24% |
| Indica II | 193 | 37.82% | 62.18% |
| Indica Intermediate | 195 | 34.36% | 65.64% |
| Temperate Japonica | 328 | 98.78% | 1.22% |
| Tropical Japonica | 86 | 34.88% | 65.12% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208628083 | A->C | INTERGENIC | None |