Detailed information of SNP:
|
SNP ID:
sf1208628537(Gbrowse)
Chromosome: chr12 Position: 8628537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 92.91% | 7.09% |
| All Indica | 736 | 92.66% | 7.34% |
| All Japonica | 485 | 92.99% | 7.01% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 353 | 94.62% | 5.38% |
| Indica II | 194 | 91.75% | 8.25% |
| Indica Intermediate | 189 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 82 | 67.07% | 32.93% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208628537 | C->T | LOC_Os12g15130(LOC_Os12g15130.1) | INTRON |