Detailed information of SNP:
|
SNP ID:
sf1208631432(Gbrowse)
Chromosome: chr12 Position: 8631432 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.04% | 3.96% |
| All Indica | 782 | 97.57% | 2.43% |
| All Japonica | 493 | 95.94% | 4.06% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208631432 | C->T | LOC_Os12g15140(LOC_Os12g15140.1) | INTRON |