Detailed information of SNP:
|
SNP ID:
sf1208633068(Gbrowse)
Chromosome: chr12 Position: 8633068 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 58.03% | 41.97% |
| All Indica | 742 | 45.82% | 54.18% |
| All Japonica | 482 | 82.16% | 17.84% |
| Aus | 64 | 26.56% | 73.44% |
| Indica I | 351 | 56.13% | 43.87% |
| Indica II | 194 | 37.63% | 62.37% |
| Indica Intermediate | 197 | 35.53% | 64.47% |
| Temperate Japonica | 328 | 93.60% | 6.40% |
| Tropical Japonica | 89 | 41.57% | 58.43% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208633068 | C->G | LOC_Os12g15140(LOC_Os12g15140.1) | INTRON |