Detailed information of SNP:
|
SNP ID:
sf1208633389(Gbrowse)
Chromosome: chr12 Position: 8633389 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 60.37% | 39.63% |
| All Indica | 753 | 46.88% | 53.12% |
| All Japonica | 478 | 85.98% | 14.02% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 355 | 56.34% | 43.66% |
| Indica II | 202 | 40.59% | 59.41% |
| Indica Intermediate | 196 | 36.22% | 63.78% |
| Temperate Japonica | 326 | 96.93% | 3.07% |
| Tropical Japonica | 86 | 46.51% | 53.49% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 34 | 61.76% | 38.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208633389 | T->C | LOC_Os12g15140(LOC_Os12g15140.1) | INTRON |