Detailed information of SNP:
|
SNP ID:
sf1208634576(Gbrowse)
Chromosome: chr12 Position: 8634576 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 74.55% | 25.45% |
| All Indica | 741 | 69.37% | 30.63% |
| All Japonica | 484 | 87.60% | 12.40% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 352 | 80.11% | 19.89% |
| Indica II | 191 | 59.16% | 40.84% |
| Indica Intermediate | 198 | 60.10% | 39.90% |
| Temperate Japonica | 330 | 94.55% | 5.45% |
| Tropical Japonica | 87 | 59.77% | 40.23% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208634576 | T->A | LOC_Os12g15140(LOC_Os12g15140.1) | INTRON |